CLC Sequence Viewer creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.
Bioinformatics features in CLC Sequence Viewer
-Multiple alignment of DNA, RNA, and proteins
-Two proprietary algorithms
-ClustalW
-Muscle
-T-Coffee
-MAFFT
-Kalign
-Consensus sequence determination and management
-Conservation score along alignments
-Open reading frame determination
-Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
-Translation from DNA to proteins (all genetic translation tables)
-Reports with residue composition, molecular weight and iso electric point (for proteins)
-Neighbor-joining and UPGMA phylogenies
-Restriction site analysis and viewing
-Create reverse complement
-Shuffle sequence
-Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
Other features in CLC Sequence Viewer
-Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
-All types of files can be saved in local projects and launched from the program
-Detailed history log
-User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
-Text-based sequence view
-Easy printing of reports and graphics
-Export of user-defined figures to various graphics file formats
-Import and export of data in a large number of file formats
-Option of working with different files and in different file projects at the same time
-Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
Intuitive and friendly tool.